Skip to content

Almond Flour Pumpkin Muffins – Gluten Free & Cozy Fall Treats

vivian_300
Published : September 30, 2025
Updated : October 7, 2025

There’s something magical about the way cinnamon and nutmeg float through the kitchen when I bake almond flour pumpkin muffins. The air feels warmer, and the moment I open the oven, a wave of spiced sweetness wraps around me. These muffins are golden and tender, with that nutty almond flour giving them a richness I adore. They’re just sweet enough, moist from the pumpkin puree, and comforting in a way only fall baking can be. Every year when the leaves start turning, I pull out this recipe, it’s my little tradition of slowing down, brewing tea, and savoring the flavors of the season. On crisp mornings, I like to sip hibiscus tea while enjoying one warm from the oven.

almond flour pumpkin muffins topped with chocolate chips, gluten free fall recipe
Moist almond flour pumpkin muffins sprinkled with chocolate chips, a cozy gluten free treat.

The Story of Almond Flour Pumpkin Muffins

I remember discovering almond flour pumpkin muffins one October morning when I wanted to bake something nourishing without the heaviness of traditional flour. At first, I worried the muffins would turn out dense, but instead, they came out soft and fragrant, filling the whole house with pumpkin spice joy. My husband grabbed one straight from the cooling rack, burned fingers and all, and declared it the best fall bake I’d ever made.

That moment became the start of a ritual. Now, when family visits, they expect a basket of these gluten free pumpkin muffins on the table. The almond flour makes them naturally grain free, which means everyone can enjoy them without fuss. I sometimes add them to a brunch board with apple cinnamon quick bread, so guests can choose between fruity or spiced flavors. Each bake carries a piece of autumn with it.

Print
clockclock iconcutlerycutlery iconflagflag iconfolderfolder iconinstagraminstagram iconpinterestpinterest iconfacebookfacebook iconprintprint iconsquaressquares iconheartheart iconheart solidheart solid icon
almond flour pumpkin muffins recipe, gluten free and grain free fall baking

Almond Flour Pumpkin Muffins Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star

No reviews

Golden, cozy almond flour pumpkin muffins with maple sweetness and warm spices. Moist, naturally gluten free, and perfect for a fall breakfast or snack. Simple to mix, quick to bake, and easy to love.

  • Total Time: 40 minutes
  • Yield: 10 muffins 1x

Ingredients

Scale

1 1/2 cups blanched almond flour

1/2 teaspoon kosher salt

3/4 teaspoon baking soda

2 1/2 teaspoons ground cinnamon

1/2 teaspoon ground cloves

1/4 teaspoon ground nutmeg

4 large eggs

3/4 cup canned pumpkin (not pie filling)

1/3 cup pure maple syrup

1 teaspoon pure vanilla extract

Up to 1/2 cup mix-ins (dark chocolate chips, dried cranberries, or chopped pecans)

Instructions

  1. Prep: Heat oven to 350°F (175°C). Line 10 wells of a 12-cup muffin tin.
  2. Mix: In Bowl A, whisk almond flour, salt, baking soda, cinnamon, cloves, and nutmeg. In Bowl B, whisk eggs, pumpkin, maple syrup, and vanilla. Pour B into A and stir gently just until combined; fold in any mix-ins.
  3. Bake: Divide batter (fill nearly to the top). Bake 22–24 minutes, until a toothpick comes out clean. Cool 5 minutes in pan, then finish on a rack. Enjoy warm.

Notes

Tips: Stop mixing as soon as the dry spots disappear for tender muffins. Check at 20 minutes; almond flour browns quickly. Storage: airtight at room temp 2 days, then refrigerate up to 1 week; freeze up to 3 months.

  • Author: Vivian Brooks
  • Prep Time: 15 minutes
  • Cook Time: 22 minutes
  • Category: Breakfast
  • Method: Baked
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin
  • Calories: 158
  • Sugar: 8g
  • Fat: 10g
  • Saturated Fat: 1g
  • Unsaturated Fat: 9g
  • Trans Fat: 0g
  • Carbohydrates: 13g
  • Fiber: 3g
  • Protein: 6g
  • Cholesterol: 65mg

Why These Ingredients Work So Well Together

What I love about this recipe is how every ingredient has its purpose. It’s not just about flavor, it’s about balance, texture, and creating something that feels wholesome without sacrificing taste. These paleo pumpkin muffins feel indulgent, but they stay light and nourishing.

Almond Flour

The hero of the recipe, almond flour keeps the muffins moist and soft while adding a nutty undertone. Because it’s grain free, it naturally makes the muffins gluten free, perfect for sharing with friends who have dietary needs. It also provides a lovely golden crumb that feels indulgent without being heavy.

Pumpkin Puree

That deep orange pumpkin puree doesn’t just bring seasonal flavor, it brings moisture and richness. It ensures the muffins stay tender for days. I always use plain canned pumpkin, not pie filling, so I can control the sweetness and spice balance. According to the USDA nutrition database, pumpkin is naturally rich in fiber and vitamin A, which makes every bite as nourishing as it is delicious.

Maple Syrup & Spices

Pure maple syrup sweetens gently without overpowering, while cinnamon, nutmeg, and cloves layer the muffins with warmth. The combination makes the kitchen smell like fall mornings and cozy gatherings. I love how maple syrup blends smoothly with the spices, creating a harmony of flavor that feels timeless. These healthy fall muffins capture that perfect balance.

Step-by-Step Instructions & Tips

Baking almond flour pumpkin muffins is easy, but a few mindful steps make all the difference between good and unforgettable. Even if you’re aiming for low carb pumpkin muffins, the process is the same and the results are just as satisfying.

Step 1: Prep the Oven

I preheat the oven to 350°F and line my muffin tin with papers. This small act feels like the opening note of a favorite song, I know something wonderful is about to begin. On weekends, I sometimes prepare apple crisp as well, so the house fills with warm, layered aromas.

Step 2: Mix the Ingredients

In one bowl, I whisk almond flour, baking soda, and spices. In another, I combine pumpkin, eggs, maple syrup, and vanilla. When I fold them together, I stop the moment the flour disappears. Overmixing makes muffins tough, so I treat the batter gently. Then I add chocolate chips or chopped pecans if I’m feeling indulgent. This step always makes me smile, it feels like I’m adding a little surprise inside each muffin.

Step 3: Bake to Perfection

I spoon the batter into the cups, filling them almost to the top. Twenty-two minutes later, the kitchen smells like heaven. I check with a toothpick, if it comes out clean, they’re ready. I let them rest for a few minutes in the pan, then move them to a rack where steam curls into the air like a promise of comfort. If I’m entertaining, I’ll also bake a batch of pumpkin cinnamon roll muffins for variety.

freshly baked almond flour pumpkin muffins in muffin tin with chocolate chips
Warm almond flour pumpkin muffins baked in a tin, topped with rich chocolate chips.
StepAction
1Preheat oven to 350°F and line muffin tin with papers.
2Mix dry ingredients in one bowl, wet in another, then fold gently.
3Bake 22–24 minutes until golden and set.

Variations & Serving Ideas

Part of the fun of these muffins is how versatile they are. I adjust them depending on the mood, the season, or who I’m baking for. Whether you’re craving paleo pumpkin muffins or healthy fall muffins, there’s always a way to adapt the recipe.

Nut-Free Delight

When baking for friends with nut allergies, I swap almond flour for sunflower seed flour. The texture is similar, though the flavor is earthier. It’s a simple change that makes the muffins inclusive without losing their charm. They still come out moist and fragrant, and everyone at the table feels thought of.

Chocolate Indulgence

On days I crave something decadent, I stir in chunks of dark chocolate. They melt into gooey pockets, making every bite feel like dessert. Paired with coffee, it’s the perfect afternoon escape. The mix of pumpkin spice and chocolate is simply irresistible. These low carb pumpkin muffins also taste fantastic with sugar-free chocolate chips.

Savory Twist

Sometimes, I skip the maple syrup and fold in shredded cheddar and herbs instead. The result is a savory muffin that pairs beautifully with soups or salads, especially on chilly evenings. It transforms the recipe from a sweet treat to a versatile side dish that surprises guests. For brunch spreads, I love placing them next to pumpkin cream cheese muffins so guests can enjoy both savory and sweet pumpkin bakes.

VariationWhat to Do
Nut-FreeReplace almond flour with sunflower seed flour.
Chocolate LoversAdd chunks of dark chocolate or chips.
Savory TwistOmit sweetener and fold in cheese and herbs.

Final Thoughts

Every time I bake almond flour pumpkin muffins, I’m reminded why this recipe holds such a special place in my kitchen. It’s not only about the taste of pumpkin, cinnamon, and maple—it’s about the comfort of baking itself. The quiet hum of the oven, the scent of spices in the air, and the joy of pulling a tray of golden muffins from the oven always make me pause and smile.

For variety, I sometimes serve these muffins alongside a loaf of apple cinnamon quick bread so guests can enjoy two different cozy flavors. On slower mornings, I love enjoying one warm with my favorite coffee, while in festive gatherings I pair them with fresh fruit or spiced cookies. However they’re served, these muffins feel like little reminders of autumn’s best moments, always bringing warmth and connection to the table.

FAQ

How do I store almond flour pumpkin muffins?

I usually keep mine in an airtight container on the counter for up to two days. After that, I refrigerate them, where they stay moist for nearly a week. The almond flour helps retain freshness, so they taste wonderful even chilled. These grain free pumpkin muffins hold their texture really well, which makes them a smart make-ahead option.

Can I freeze almond flour pumpkin muffins?

Absolutely. I wrap each muffin individually, tuck them into a freezer-safe bag, and freeze for up to three months. To enjoy, I thaw them overnight in the fridge or warm them gently in the oven. They come out nearly as soft as the day they were baked, which is why I always make a double batch. It’s one of the reasons I recommend these paleo pumpkin muffins to busy friends.

What’s the best substitute for maple syrup?

Honey works beautifully if you’re not strict about paleo guidelines. If you’re watching sugar, monk fruit syrup is my favorite swap—it sweetens without overpowering and keeps the muffins moist. I’ve tried both, and the results are always satisfying. Sometimes I’ll even use date syrup for a richer, deeper sweetness. Low carb pumpkin muffins work especially well with sugar-free alternatives like monk fruit or stevia blends.

Are these muffins paleo-friendly?

Yes, they are! Made with almond flour, pumpkin, eggs, and natural sweetener, these muffins fit comfortably into a paleo lifestyle. Friends following paleo diets have enjoyed them at my table, and not once did anyone feel like they were missing out on traditional baked goods. In fact, most can’t believe they’re grain free until I tell them. It’s one more reason why these gluten free pumpkin muffins are a staple in my kitchen every fall.

About the author

This recipe was crafted by Brooks Vivian, who develops quick and creative vegetarian meals. His focus is on simple, flavorful dishes that fit easily into a busy lifestyle.

2 Comments


Add a Comment

Your email address will not be published. Required fields are marked *

Recipe rating 5 Stars 4 Stars 3 Stars 2 Stars 1 Star

About HookedToCook

At HookedToCook, we believe that cooking should be simple, quick, and fun. Whether you’re a busy professional, a parent, or someone just learning to cook, our step-by-step recipes are designed to make mealtime easy and enjoyable. Join our community and discover how every minute in the kitchen can turn into a moment worth savoring!

Recent Recipes