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Protein Pumpkin Muffins Recipe That’s High-Protein, Moist & Delicious

eleanor _100
Published : July 25, 2025
Updated : July 28, 2025

Protein Pumpkin Muffins always remind me of those crisp fall weekends when the kitchen fills with warm spices and cozy anticipation. I remember the first time I baked them, it started as a healthy swap during my sourdough phase. I never expected them to become a weekly tradition. These muffins are moist, rich in pumpkin flavor, and naturally sweetened with a subtle touch of vanilla protein. If you love seasonal bakes, you might also enjoy these Sourdough Pumpkin Muffins for something a little tangier.

Protein Pumpkin Muffins fresh from oven
Freshly baked protein pumpkin muffins
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Served protein pumpkin muffins with coffee

Protein Pumpkin Muffins


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  • Author: Eleanor Quin
  • Total Time: 35 minutes
  • Yield: 12 muffins

Description

These protein-packed pumpkin muffins are moist, fluffy, and full of autumn flavor. Made with oat flour, Greek yogurt, pumpkin puree, and vanilla protein powder, they’re a healthy and satisfying treat perfect for meal prep or cozy mornings.


Ingredients

Scale

1 1/2 cups oat flour

1 teaspoon baking soda

1 1/2 teaspoons ground cinnamon

1/4 teaspoon salt

2 large eggs

1 cup pumpkin puree

1/2 cup Greek yogurt

1/3 cup maple syrup

1/2 cup vanilla protein powder


Instructions

  1. Prepare your ingredients:Ingredients for protein pumpkin muffinsGather oat flour, baking soda, cinnamon, salt, eggs, pumpkin puree, Greek yogurt, maple syrup, and protein powder.
  2. Mix wet and dry ingredients:In one bowl, mix oat flour, baking soda, cinnamon, and salt. In another, whisk eggs, pumpkin puree, Greek yogurt, maple syrup, and protein powder. Combine until smooth.
  3. Fill muffin tin:Muffin batter portioned into linersLine a muffin tray and fill each cup 3/4 full with batter.
  4. Bake the muffins:Bake at 350°F (175°C) for 22–25 minutes until a toothpick comes out clean. Let them cool slightly before serving.
  5. Serve and enjoy:Baked protein pumpkin muffins served on plateEnjoy warm or store in an airtight container. Perfect with coffee or as a post-workout snack.

Notes

Store in the fridge for up to 5 days or freeze for longer. Reheat for 30 seconds before serving. Add nuts, chocolate chips, or spices like ginger or cardamom for variations.

  • Prep Time: 10 minutes
  • Cook Time: 25 minutes
  • Category: Dessert
  • Method: Baking
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin
  • Calories: 120
  • Sugar: 5g
  • Sodium: 160mg
  • Fat: 2g
  • Saturated Fat: 0.5g
  • Unsaturated Fat: 1.5g
  • Trans Fat: 0g
  • Carbohydrates: 14g
  • Fiber: 3g
  • Protein: 8g
  • Cholesterol: 30mg

Why You’ll Love These Protein Pumpkin Muffins

These healthy pumpkin muffins are quick to prep and are my go-to easy pumpkin muffin recipe, full of flavor, and perfect for any time of day. Plus, they make your kitchen smell amazing.

What Makes These Muffins So Special?

They combine the nutrition of oats and pumpkin with the rich texture of Greek yogurt and vanilla protein powder. Unlike sugar-loaded bakery versions, these healthy pumpkin muffins keep you full and satisfied. I often rotate them with my air fryer vegan banana muffins like my 3-Ingredient Pumpkin Muffins for weekly breakfast variety. They’re simple, smart, and surprisingly indulgent.

How Do They Fit into a Busy Lifestyle?

These protein pumpkin muffins are ideal for busy weeks. I bake them on Sunday, pop them in the fridge, and reheat them in 30 seconds. They hold up beautifully and pair perfectly with coffee or nut butter. According to Harvard Health, pumpkin supports eye health and immunity, great bonuses in a cozy snack.

Protein Pumpkin Muffins sliced open showing fluffy pumpkin interior
Moist pumpkin muffins sliced to reveal their soft, protein-rich center

Key Ingredients Breakdown

Every ingredient in these protein pumpkin muffins is selected for flavor, function, and fuel. Let’s break down why they work, and how to adapt them to your taste or pantry.

Why Is Oat Flour Better Than White Flour?

Oat flour adds fiber and a slightly nutty flavor that works perfectly with pumpkin. It’s naturally gluten-free and supports digestive health. I grind mine at home with a food processor, super simple. For other creative bakes with smart flours, check out my Zucchini and Cottage Cheese Flatbread. According to Healthline, oats help reduce cholesterol and stabilize blood sugar thanks to their beta-glucan content. This makes oat flour muffins a nutrient-packed choice for daily snacking.

What Makes the Protein Combo So Effective?

Greek yogurt, eggs, and vanilla protein powder create a moist, structured crumb that keeps you satisfied. Pumpkin puree ties it together with natural sweetness and potassium. This blend outperforms most pumpkin cottage cheese muffins in both texture and simplicity. It’s a great base for any pumpkin protein bake, balanced and endlessly customizable.

How to Make Protein Pumpkin Muffins

This easy pumpkin muffin recipe is beginner-friendly, no mixer required, and comes together in under 10 minutes. Perfect for meal prep or cozy baking nights.

What’s the Step-by-Step Process?

Start by combining oat flour, baking soda, cinnamon, and salt. In another bowl, whisk together eggs, pumpkin puree, Greek yogurt, maple syrup, and vanilla protein powder. Combine wet and dry ingredients until smooth. Portion into a lined muffin tin and bake at 350°F (175°C) for 22–25 minutes. For tips on ingredient ratios and safe storage, the USDA FoodData Central is a reliable source I often consult.

Can You Customize the Texture?

Absolutely. For extra fluffiness, fold in 1 tsp of apple cider vinegar at the end. Want a richer bite? Add a handful of chopped walnuts or dark chocolate chips. These protein pumpkin muffins are sturdy but tender, perfect for slicing or enjoying warm from the oven.

Pumpkin protein muffin batter in paper liners ready for baking
Muffin batter portioned into paper liners, ready to bake

Health & Nutrition Benefits

These muffins aren’t just tasty, they pack a punch when it comes to nutrition. If you’re tracking macros or just want better fuel, they deliver.

Why Are These Muffins a Smart Choice?

They offer fiber, protein, and complex carbs, which makes them ideal for anyone following a high-protein diet in a portable, no-fuss format. With pumpkin’s antioxidants and the steady energy from oat flour, it’s a snack that satisfies beyond cravings. According to healthline, combining protein with beta-carotene sources like pumpkin can help with cellular repair and blood sugar regulation.

What’s the Nutritional Profile Like?

Each muffin has approximately 8g of protein, 3g of fiber, and just 120 calories. This pumpkin protein bake format makes smart snacking easier, especially for those managing weight or looking to boost satiety. I often pair one with coffee in the morning or almond milk post-workout. It’s practical fuel you can feel good about.

Storage and Meal Prep Tips

Protein pumpkin muffins are meal-prep gold. They freeze well, stay moist, and reheat like a dream.

How Should You Store Them?

Once cooled, store your muffins in an airtight container in the fridge for up to 5 days. For longer storage, freeze them individually and thaw overnight or microwave for 30 seconds. I use silicone meal prep trays for easy access and zero waste. These high-protein pumpkin snacks are just as good on day five as they are fresh.

Are They Good for Meal Planning?

Absolutely. Bake a double batch, freeze half, and rotate them throughout the week. They hold their shape, flavor, and texture beautifully. For a balanced breakfast, I often pair mine with dairy-free yogurt or a smoothie. If you’re a planner like me, check out my Protein-Packed Oat Bars like my 3-Ingredient Pumpkin Muffins, another meal prep favorite.

Protein pumpkin muffins stored in meal prep container on counter
Pumpkin muffins stored for the week in reusable meal prep trays

Fun Variations to Try

Once you’ve mastered the base, these protein pumpkin muffins can become your fall baking playground.

What Can You Add for Texture?

Chopped pecans, sunflower seeds, or cacao nibs work beautifully. For a softer texture, try folding in mashed banana or a swirl of almond butter before baking. You can even turn them into mini loaves or muffin tops. For more fall baking ideas, I often rotate these with chai-spiced muffins or my Apple Cinnamon Protein Donuts like my 3-Ingredient Pumpkin Muffins.

How Can You Adjust the Flavor?

Add pumpkin pie spice or a dash of cardamom for depth. If you like sweetness, a teaspoon of maple syrup or date paste does wonders. I once added grated ginger and it gave these protein pumpkin muffins a subtle holiday twist that friends still talk about.

Final Thoughts

With a handful of pantry staples and one bowl, these protein pumpkin muffins bring together flavor, nutrition, and convenience. They’re the kind of bake that makes fall mornings better, warm, filling, and just sweet enough.

I’ve made these for Sunday brunch, school snack boxes, and even a quick bite before long runs. They always get smiles. Whether you’re eating healthier or simply craving a cozy treat, these muffins are a go-to. For a final touch of indulgence, I like to top mine with a thin smear of almond butter or vegan cream cheese.

If this recipe brought some joy to your kitchen, come explore more creations on our full vegetarian recipe blog. You’ll find ideas for every season and mood. Don’t forget to join our community over on Facebook and get inspired daily on Pinterest. Let’s cook smarter, and more joyfully, together.

Protein Pumpkin Muffins, FAQ

Which protein goes well with pumpkin?

Vanilla-flavored protein powder pairs best with pumpkin. It complements the natural sweetness and blends smoothly into the batter without overpowering the taste.

Are these protein pumpkin muffins freezer-friendly?

Yes! You can freeze them for up to 2 months. Just let them cool completely, then store in an airtight bag or container. Reheat in the microwave or oven as needed.

Can I make these healthy pumpkin muffins gluten-free?

Absolutely. Use certified gluten-free oat flour or substitute with almond flour. Just watch the texture, almond flour may require slight moisture adjustment.

What’s the best way to sweeten protein pumpkin muffins naturally?

Maple syrup, mashed banana, or date paste are all great natural sweeteners. They add flavor, fiber, and moisture without refined sugar.

How do these muffins support a high-protein diet?

Each muffin has around 8 grams of protein, thanks to Greek yogurt, eggs, and protein powder. They’re ideal as part of a high-protein breakfast or post-workout snack.

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